basepairFrequency

helix


    Calculates the frequency of each basepair in a given helix structure.
    Internally, breaks helices into basepairs, and returns a structure of
    unique basepairs, where the values is its frequency, regardless of original
    value.


aplot

Basepair Frequency

A package for RNA basepair analysis, including the visualization of basepairs as arc diagrams for easy comparison and annotation of sequence
and structure.  Arc diagrams can additionally be projected onto multiple sequence alignments to assess basepair conservation and
covariation, with numerical methods for computing statistics for each.

Daniel Lai

R4RNA

An R package for RNA visualization and analysis

Basepair Frequency function

Calculates the frequency of each basepair in a given helix structure.
    Internally, breaks helices into basepairs, and returns a structure of
    unique basepairs, where the values is its frequency, regardless of original
    value.

Basepair Frequency: Calculates the frequency of each basepair

Description

Usage

Arguments

Value

See Also

Examples